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February 10, 2008


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Intro to Pharmacogenomics: Trying to Understand Differences in Treatment Outcomes

   Infused throughout the website is a constant recognition that “patients are different”, but while we know this intuitively, we’re really not moved to a point of individualizing treatment on the basis of this.  There are many lines of clinical research that are moving in that direction, and one of the key elements is pharmacogenomics, the study of the genetic underpinnings of the differences among people in response to a medication, both in terms of response and side effects.  The slides for this post are stolen appropriated from Dr. David Gandara, one of the true leaders in the field of lung cancer, who heads the Lung Cancer Program at the University of California at Davis, as well as the Lung Cancer Committee for the Southwest Oncology Group (SWOG).  He is also the new President Elect of the International Association for the Study of Lung Cancer.  He and his collaborators have been adding to our understanding of this field as it relates to lung cancer.

   Whether we’re talking about conventional chemotherapy, EGFR inhibitors, or just narcotics, it’s clear that there are major differences in how different patients respond.   Although we’re on the cusp of tailoring treatments based on type of NSCLC (squamous vs. adeno, or BAC, for instance), and smoking status, and perhaps even racial background, our general practice has historically been to use a one size fits all approach:

Pharmacogenetics all same

(Click on image to enlarge)

In fact, though, we know that some patients have a very nice response to chemo, or a targeted therapy like tarceva, while others have a minimal response or actually progress on treatment.  We also know that some people tolerate chemo very well, while others terrible side effect problems.  We could really improve the field if we could identify, using molecular profits, the best vs. the worst responders and the patients who were destined to develop terrible treatment side effects before we actually give the therapy:

Pharmacogenomics different groups

By doing that, we could separate out those patients who would have a poor response or bad toxicity and give them a different treatment instead:

Pharmacogenomics, diffs and separate

    At the present time, we routinely use squamous vs. adenocarcinoma histology, as well as smoking status, for clinical decision-making, but these are clinical and not molecular profiles.  We have several examples of molecular profiles that are very promising and are beginning to be employed but are not yet considered standard approaches for routine management.  Examples include ERCC1 for assessing resistance to cisplatin (post here), gene signatures to predict which patients are responsive to various chemo agents (post here), EGFR FISH in predicting improved outcomes on cetuximab (post here), or resistance to EGFR inhibitors as predicted by ras mutations (post here).  

    Another potential implication of this work is that there may be important differences in how various treatments work in different populations.  EGFR inhibitors may be considerably more effective in studies from Japan than ones from the US or Europe.  Chemo may work differently in some populations than in others.  But as more and more trials are done in Asia, Europe, and elsewhere around the world, the study of pharmacogenomics reminds us that it is important to consider whether we can generalize conclusions across continents and different races.  We’ll turn to such questions next.



posted by Dr. West @ 10:15 pm link to this post

2 Responses to “Intro to Pharmacogenomics: Trying to Understand Differences in Treatment Outcomes”

  1. 1
    Chanwit Says:

    I believe that molecular profiling will become the standard of clinical decision-making in the future, but how far in the future?
    Will this molecular profiling be able to use just DNA or blood samples for decision-making because it seems that the present technology doesn’t allow for easy tumor sampling.

  2. 2
    Dr. West Says:

    Good point. A requirement for actual tumor tissue is a major obstacle, especially for lung cancer, where our practice otherwise allows us to just do a small needle biopsy, less than is often needed for molecular profiling. Many tests are in the process of being developed to try to screen blood samples, but that remains a taller orer than working from tumor issue, which itself isn’t easy and accepted and widely reliable yet.

    But you’re right that a need for a big chunk of tissue will likely need to be overcome before molecular profiling for advanced NSCLC comes of age. That, or we’ll fall back on other tissue collection techniques that require much more tissue than we had been in the habit of collecting for routine advanced LC management.

    -Dr. West

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About the Author:
Howard (Jack) West, MD
Dr. West serves as the Founder and Managing Member of OncTalk, LLC. He is a medical oncologist and Director of Medical Therapeutics for Thoracic Oncology at the Swedish Cancer Institute in Seattle, Washington.
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Disclaimer: The information provided at OncTalk is for informational purposes only. Howard West, MD is not providing medical advice, diagnosis or treatment and cannot replace the medical advice of your doctor or health care provider.